AGTTGAGCTTTGCAATCCGCGAGTTCTTTCGTCCGTGTTCAAACTTCAAAGTAGAGAGATCAATGGCGGCAGAGAAGAAGGAGGTTGCCGACGCCGCCGC[CGGCAGCG/CGGCAGCA]
GCAGCGACACAATCCTCCTAATCAGCTCCGACGGCGAGCACTTCAACGTGCCGTCGGCGGCGGCGAGCCTGTCACAGCTCGTCTCCAACATGATCGAGGA
TCCTCGATCATGTTGGAGACGAGCTGTGACAGGCTCGCCGCCGCCGACGGCACGTTGAAGTGCTCGCCGTCGGAGCTGATTAGGAGGATTGTGTCGCTGC[CGCTGCCG/TGCTGCCG]
GCGGCGGCGTCGGCAACCTCCTTCTTCTCTGCCGCCATTGATCTCTCTACTTTGAAGTTTGAACACGGACGAAAGAACTCGCGGATTGCAAAGCTCAACT
| Populations | Population Size | Frequency of CGGCAGCG(primary allele) | Frequency of CGGCAGCA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 50.00% | 46.30% | 6.85% | 0.00% | NA |
| All Indica | 492 | 30.70% | 65.20% | 5.89% | 0.00% | NA |
| All Japonica | 244 | 93.00% | 0.00% | 6.97% | 0.00% | NA |
| Aus | 7 | 0.00% | 85.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 30.70% | 65.20% | 5.89% | 0.00% | NA |
| Indica II | 215 | 51.20% | 45.00% | 6.98% | 0.00% | NA |
| Indica III | 21 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 17.50% | 76.80% | 6.84% | 0.00% | NA |
| Temperate Japonica | 189 | 92.60% | 0.00% | 7.41% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 0.00% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 55.60% | 37.50% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 29.20% | 64.90% | 8.23% | 0.00% | NA |