CATACTGTTTCTGAAAATGCGGATCCAGATCAAACTATTTCTGAAAATGTTCACAAATTTCAAAAACTAAAGCAAATTACATTGTAAAATACTGGGCGAG[CTTCTTC/CTTCTTT]
TTCTTGACCTGTACTTGTTTACCGAAGCACGCTGACGTCCGGCGTGCCCACTTTCTGATCTTCTTGTCTTCAGCAATGTCGGAAAAATCACAGTGATCAT
ATGATCACTGTGATTTTTCCGACATTGCTGAAGACAAGAAGATCAGAAAGTGGGCACGCCGGACGTCAGCGTGCTTCGGTAAACAAGTACAGGTCAAGAA[GAAGAAG/AAAGAAG]
CTCGCCCAGTATTTTACAATGTAATTTGCTTTAGTTTTTGAAATTTGTGAACATTTTCAGAAATAGTTTGATCTGGATCCGCATTTTCAGAAACAGTATG
| Populations | Population Size | Frequency of CTTCTTT(primary allele) | Frequency of CTTCTTC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 49.20% | 46.40% | 8.14% | 0.00% | NA |
| All Indica | 492 | 70.30% | 23.50% | 8.13% | 0.00% | NA |
| All Japonica | 244 | 12.10% | 80.70% | 8.20% | 0.00% | NA |
| Aus | 7 | 71.40% | 28.60% | 0.00% | 0.00% | NA |
| Indica I | 492 | 70.30% | 23.50% | 8.13% | 0.00% | NA |
| Indica II | 215 | 67.00% | 26.90% | 8.37% | 0.00% | NA |
| Indica III | 21 | 76.20% | 15.80% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 71.60% | 21.80% | 8.42% | 0.00% | NA |
| Temperate Japonica | 189 | 5.70% | 87.30% | 7.41% | 0.00% | NA |
| Tropical Japonica | 36 | 48.40% | 44.40% | 13.89% | 0.00% | NA |
| Japonica Intermediate | 19 | 11.10% | 84.20% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 61.00% | 33.20% | 8.66% | 0.00% | NA |