CCCCAAATCCAAAAGGAAAGATTGCCATCTATCGCCCAATTGCCCTCCAAGAACATGCAACCTGCACAAGTGCAGAGGCCTGCATCCCCCTCGAGGTAGA[TCACGTCACGTC/TCAC]
GCACGTGTGCAACGCATCGTGTGCCATGTCATCAGTTGGGGAACCTGCAGTCGCGGCGGATCTCGCCGCCGGTGGCCGGCGACTTGACGCCGACCCTGCC
GGCAGGGTCGGCGTCAAGTCGCCGGCCACCGGCGGCGAGATCCGCCGCGACTGCAGGTTCCCCAACTGATGACATGGCACACGATGCGTTGCACACGTGC[GACGTGACGTGA/GTGA]
TCTACCTCGAGGGGGATGCAGGCCTCTGCACTTGTGCAGGTTGCATGTTCTTGGAGGGCAATTGGGCGATAGATGGCAATCTTTCCTTTTGGATTTGGGG
| Populations | Population Size | Frequency of TCACGTCACGTC(primary allele) | Frequency of TCAC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 79.50% | 9.60% | 12.14% | 0.00% | NA |
| All Indica | 492 | 68.90% | 15.90% | 18.09% | 0.00% | NA |
| All Japonica | 244 | 99.20% | 0.00% | 0.82% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 68.90% | 15.90% | 18.09% | 0.00% | NA |
| Indica II | 215 | 61.40% | 19.00% | 24.19% | 0.00% | NA |
| Indica III | 21 | 47.60% | 41.20% | 19.05% | 0.00% | NA |
| Indica Intermediate | 190 | 68.40% | 19.80% | 14.74% | 0.00% | NA |
| Temperate Japonica | 189 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 72.30% | 16.50% | 13.42% | 0.00% | NA |