Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CATGAACTGATTATTTCCCTAAACTTTCATATGCCCGGGTATGTAGCTTGTAGATGGGATCTCTTGAGCTGAAGGCTGAAAATTTCCCTGTTATCTTAAA[G/A]
AAAATGTACCTTGTATTTATAGTAGGAAAATATCTAAGTGTACAGCCTTTACTTTCTCGAATAGTAACTCTTCCGAATATTCTTGCGCGATGATATTTTT

Reverse complement sequence

AAAAATATCATCGCGCAAGAATATTCGGAAGAGTTACTATTCGAGAAAGTAAAGGCTGTACACTTAGATATTTTCCTACTATAAATACAAGGTACATTTT[C/T]
TTTAAGATAACAGGGAAATTTTCAGCCTTCAGCTCAAGAGATCCCATCTACAAGCTACATACCCGGGCATATGAAAGTTTAGGGAAATAATCAGTTCATG

Allele Frequencies:

Populations Population SizeFrequency of G(primary allele) Frequency of A(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 99.50% 0.40% 0.13% 0.00% NA
All Indica  492 99.40% 0.40% 0.20% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 99.40% 0.40% 0.20% 0.00% NA
Indica II  215 98.60% 0.90% 0.47% 0.00% NA
Indica III  21 85.70% 10.00% 4.76% 0.00% NA
Indica Intermediate  190 100.00% 0.00% 0.00% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 99.60% 0.40% 0.00% 0.00% NA