ACTACACCAGGCCGCCCTACGTGCACAAGAACCTCAAGAGCAGCAACGTCCTCCTCGACGCCGACTTCCGCGCCAAGGTCTCCAACTTCGGCCTGGCGCG[CACCGTC/CGCCGTT,CGCCGTC]
GCCGGCGCCGGCGGGCAGATGACGTCGCGCGTCGTGGGTACGCAGGGGTACATGGCGCCGGAGTACCTGGAGCACGGGCTGATCGGGCCTCACCTCGACG
CGTCGAGGTGAGGCCCGATCAGCCCGTGCTCCAGGTACTCCGGCGCCATGTACCCCTGCGTACCCACGACGCGCGACGTCATCTGCCCGCCGGCGCCGGC[GACGGTG/AACGGCG,GACGGCG]
CGCGCCAGGCCGAAGTTGGAGACCTTGGCGCGGAAGTCGGCGTCGAGGAGGACGTTGCTGCTCTTGAGGTTCTTGTGCACGTAGGGCGGCCTGGTGTAGT
| Populations | Population Size | Frequency of CACCGTC(primary allele) | Frequency of CGCCGTT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 78.70% | 13.10% | 9.43% | 0.00% | NA |
| All Indica | 492 | 70.30% | 21.00% | 10.98% | 0.00% | NA |
| All Japonica | 244 | 93.90% | 0.00% | 6.15% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 70.30% | 21.00% | 10.98% | 0.00% | NA |
| Indica II | 215 | 63.30% | 30.60% | 8.84% | 0.00% | NA |
| Indica III | 21 | 47.60% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 70.50% | 19.30% | 12.63% | 0.00% | NA |
| Temperate Japonica | 189 | 93.10% | 0.00% | 6.88% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 73.60% | 15.80% | 12.55% | 0.00% | NA |