AGTTCATCGACACAAGAAGCTCGAGCTCGCTGTGTGTGCTTGCAATGGCGGGGGTGCACACGCACAGGGCGTTCCTGCTCTGCAACTACCTCCTCCTCGG[CGCCGCCTCG/CGCCTCCTCC,CGCCGCCTCC]
GGCTGCATCTTCCTCACGCTCTCCCTCCGCCTCCTCCCGTCCCCGTGCGGCCTCCTCCTCGTCTTCCTCCACGCCCTCACCGCCGTCCTCGCCGCCGCGG
CCGCGGCGGCGAGGACGGCGGTGAGGGCGTGGAGGAAGACGAGGAGGAGGCCGCACGGGGACGGGAGGAGGCGGAGGGAGAGCGTGAGGAAGATGCAGCC[CGAGGCGGCG/GGAGGAGGCG,GGAGGCGGCG]
CCGAGGAGGAGGTAGTTGCAGAGCAGGAACGCCCTGTGCGTGTGCACCCCCGCCATTGCAAGCACACACAGCGAGCTCGAGCTTCTTGTGTCGATGAACT
| Populations | Population Size | Frequency of CGCCGCCTCG(primary allele) | Frequency of CGCCTCCTCC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 88.50% | 1.90% | 9.82% | 0.00% | NA |
| All Indica | 492 | 89.80% | 1.30% | 8.94% | 0.00% | NA |
| All Japonica | 244 | 90.20% | 0.00% | 9.84% | 0.00% | NA |
| Aus | 7 | 16.70% | 71.40% | 14.29% | 0.00% | NA |
| Indica I | 492 | 89.80% | 1.30% | 8.94% | 0.00% | NA |
| Indica II | 215 | 91.20% | 1.00% | 7.91% | 0.00% | NA |
| Indica III | 21 | 90.50% | 9.50% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 87.90% | 2.30% | 10.00% | 0.00% | NA |
| Temperate Japonica | 189 | 89.90% | 0.00% | 10.05% | 0.00% | NA |
| Tropical Japonica | 36 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 86.10% | 2.90% | 11.26% | 0.00% | NA |