Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TCCTGGCGATGTTCCCCCTTCTTTGCTCTGGCGATTGGGGGTTTGGGGATCGGAGAATCTTGGAAAGGAGCCGCGCCGCGAGAGGAGGAGGGGAGCGACG[TTGATTTG/TTGATTTT]
ATGGATGAGTAGTAGTGGTGGGAGAGATCAAAGTTGGGGGAGGATCCTAGTTCTTGCCACTGTGGGTGGGGATGGTTTTGTTTTGTTTGGGTTTCTTTCT

Reverse complement sequence

AGAAAGAAACCCAAACAAAACAAAACCATCCCCACCCACAGTGGCAAGAACTAGGATCCTCCCCCAACTTTGATCTCTCCCACCACTACTACTCATCCAT[CAAATCAA/AAAATCAA]
CGTCGCTCCCCTCCTCCTCTCGCGGCGCGGCTCCTTTCCAAGATTCTCCGATCCCCAAACCCCCAATCGCCAGAGCAAAGAAGGGGGAACATCGCCAGGA

Allele Frequencies:

Populations Population SizeFrequency of TTGATTTG(primary allele) Frequency of TTGATTTT(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 94.60% 3.80% 1.68% 0.00% NA
All Indica  492 99.20% 0.00% 0.81% 0.00% NA
All Japonica  244 85.70% 11.40% 3.28% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 99.20% 0.00% 0.81% 0.00% NA
Indica II  215 100.00% 0.00% 0.00% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 98.40% 0.00% 1.58% 0.00% NA
Temperate Japonica  189 97.40% 0.50% 2.12% 0.00% NA
Tropical Japonica  36 31.20% 61.10% 11.11% 0.00% NA
Japonica Intermediate  19 78.90% 21.10% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 95.70% 2.60% 1.73% 0.00% NA