Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TCGCCTTCTCGTGCAGGTACTCCAGCCCCTGCGCTGCGCCGTACGCCACCTTCATCCTCGTGCACCAGTCCATCGGCTTCTTGTCCGCCGGCAAATCTGC[CGACGACGACGAT/CGACGACAACGAT]
GCAACAATAACAGAACAATGGACAATCTCATTATCGTCGTCTTAGAGTATTCGTTCGCGTTGCGGCGTGTGGTGGGTGTGCGTACCGAACAAGTGTTCTT

Reverse complement sequence

AAGAACACTTGTTCGGTACGCACACCCACCACACGCCGCAACGCGAACGAATACTCTAAGACGACGATAATGAGATTGTCCATTGTTCTGTTATTGTTGC[ATCGTCGTCGTCG/ATCGTTGTCGTCG]
GCAGATTTGCCGGCGGACAAGAAGCCGATGGACTGGTGCACGAGGATGAAGGTGGCGTACGGCGCAGCGCAGGGGCTGGAGTACCTGCACGAGAAGGCGA

Allele Frequencies:

Populations Population SizeFrequency of CGACGACGACGAT(primary allele) Frequency of CGACGACAACGAT(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 96.90% 2.10% 1.03% 0.00% NA
All Indica  492 95.10% 3.30% 1.63% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 95.10% 3.30% 1.63% 0.00% NA
Indica II  215 94.40% 4.70% 0.93% 0.00% NA
Indica III  21 95.20% 4.80% 0.00% 0.00% NA
Indica Intermediate  190 95.30% 2.70% 2.11% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 96.10% 2.20% 1.73% 0.00% NA