CCTAACAACCACCTCGGCGCGGCAGACGGGGCACGTCGAGTGCTCCCTGAGCCACACATCGACGCAGCCCCGGTGGAAGACATGCATGCATCTGGGCAGC[CGCCGCG/CGCCGAG]
CCGCCTCCCCGTCGGCCATCACGGCGAGGCACACCGCGCACTCCCGTTCCTCTTCCTCCTCCTCTGCTGCCCCCACCGCGCCGCCGCCGCCCTCCTCCCT
AGGGAGGAGGGCGGCGGCGGCGCGGTGGGGGCAGCAGAGGAGGAGGAAGAGGAACGGGAGTGCGCGGTGTGCCTCGCCGTGATGGCCGACGGGGAGGCGG[CGCGGCG/CTCGGCG]
GCTGCCCAGATGCATGCATGTCTTCCACCGGGGCTGCGTCGATGTGTGGCTCAGGGAGCACTCGACGTGCCCCGTCTGCCGCGCCGAGGTGGTTGTTAGG
| Populations | Population Size | Frequency of CGCCGAG(primary allele) | Frequency of CGCCGCG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 53.40% | 40.20% | 10.72% | 0.00% | NA |
| All Indica | 492 | 79.90% | 10.30% | 10.98% | 0.00% | NA |
| All Japonica | 244 | 5.00% | 86.50% | 9.02% | 0.00% | NA |
| Aus | 7 | 42.90% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 79.90% | 10.30% | 10.98% | 0.00% | NA |
| Indica II | 215 | 74.90% | 14.40% | 12.56% | 0.00% | NA |
| Indica III | 21 | 85.70% | 5.30% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 80.50% | 10.50% | 10.00% | 0.00% | NA |
| Temperate Japonica | 189 | 4.10% | 87.30% | 8.99% | 0.00% | NA |
| Tropical Japonica | 36 | 6.50% | 80.60% | 13.89% | 0.00% | NA |
| Japonica Intermediate | 19 | 10.50% | 89.50% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 88.90% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 69.70% | 22.20% | 10.39% | 0.00% | NA |