GTCGGACGTCGGGAGCAGCCGAGAGCTCGCGACTCGCGAGAAGGGAGCCACGGTATGACTGGGAGCGCGCGTAGCGTCGTGGCGCTGCTCTTCTTGCTCG[TCGGCTCGGCTGCTCG/TCGGCTAGGCTGCTCG]
GGCCGATTCAGCCGTCACCGATGGTGAGATCTCGCAGACTGCTACAGCGCTCCTCTGTTAAATATTTTTTGAGCCTTTTGCATGATTTGCACGGTGATGA
TCATCACCGTGCAAATCATGCAAAAGGCTCAAAAAATATTTAACAGAGGAGCGCTGTAGCAGTCTGCGAGATCTCACCATCGGTGACGGCTGAATCGGCC[CGAGCAGCCGAGCCGA/CGAGCAGCCTAGCCGA]
CGAGCAAGAAGAGCAGCGCCACGACGCTACGCGCGCTCCCAGTCATACCGTGGCTCCCTTCTCGCGAGTCGCGAGCTCTCGGCTGCTCCCGACGTCCGAC
| Populations | Population Size | Frequency of TCGGCTCGGCTGCTCG(primary allele) | Frequency of TCGGCTAGGCTGCTCG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 80.60% | 10.30% | 10.08% | 0.00% | NA |
| All Indica | 492 | 91.50% | 1.30% | 7.32% | 0.00% | NA |
| All Japonica | 244 | 59.00% | 30.40% | 15.16% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 91.50% | 1.30% | 7.32% | 0.00% | NA |
| Indica II | 215 | 91.20% | 1.00% | 7.91% | 0.00% | NA |
| Indica III | 21 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 90.50% | 1.70% | 7.89% | 0.00% | NA |
| Temperate Japonica | 189 | 57.70% | 31.40% | 15.87% | 0.00% | NA |
| Tropical Japonica | 36 | 63.90% | 20.70% | 19.44% | 0.00% | NA |
| Japonica Intermediate | 19 | 63.20% | 36.80% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 66.70% | 0.00% | 33.33% | 0.00% | NA |
| Intermediate | 231 | 87.00% | 6.10% | 7.36% | 0.00% | NA |