Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TAGCCTGAGGTACCTGCTTAGCTTTGAGGTAAGCATGAATAAGTGCAGTATATGTCACCACAGTTGGGGAGCAACCCACACTCCTCATCTCCTCAAACAA[C/A]
CACTGGGCTTGTTCAATGAGTCCAGCTTTACAAAAGCTGTCAATCAAAATTGTGTATGTATACACATCAGGAGTTACACCGACCATCTTCATCTCTTGGA

Reverse complement sequence

TCCAAGAGATGAAGATGGTCGGTGTAACTCCTGATGTGTATACATACACAATTTTGATTGACAGCTTTTGTAAAGCTGGACTCATTGAACAAGCCCAGTG[G/T]
TTGTTTGAGGAGATGAGGAGTGTGGGTTGCTCCCCAACTGTGGTGACATATACTGCACTTATTCATGCTTACCTCAAAGCTAAGCAGGTACCTCAGGCTA

Allele Frequencies:

Populations Population SizeFrequency of C(primary allele) Frequency of A(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 87.70% 9.00% 3.62% 0.00% NA
All Indica  492 82.30% 13.80% 4.47% 0.00% NA
All Japonica  244 99.20% 0.00% 0.82% 0.00% NA
Aus  7 85.70% 0.00% 14.29% 0.00% NA
Indica I  492 82.30% 13.80% 4.47% 0.00% NA
Indica II  215 90.70% 7.10% 2.33% 0.00% NA
Indica III  21 42.10% 52.40% 9.52% 0.00% NA
Indica Intermediate  190 70.00% 24.90% 6.84% 0.00% NA
Temperate Japonica  189 98.90% 0.00% 1.06% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 73.20% 21.40% 6.93% 0.00% NA