Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CTCTCGCGCGACAGGAGGCTCTGCACCGCGCCCACCATCGCGTAGTTGTTCCTCGCGGCGTCGGATAGCGTGGAGGTGAAGCCGTCGTCGTCGTGCTCGA[AGGA/A]
GGAGTCGACGTCCAGCTTGATGTTGGGGAGCATGCCGGGGACGCGCCTCCACCGCCTCGAGAGGACGCTGCATCTCACGGCCTCCCGCGTGTCCAGCTTG

Reverse complement sequence

CAAGCTGGACACGCGGGAGGCCGTGAGATGCAGCGTCCTCTCGAGGCGGTGGAGGCGCGTCCCCGGCATGCTCCCCAACATCAAGCTGGACGTCGACTCC[TCCT/T]
TCGAGCACGACGACGACGGCTTCACCTCCACGCTATCCGACGCCGCGAGGAACAACTACGCGATGGTGGGCGCGGTGCAGAGCCTCCTGTCGCGCGAGAG

Allele Frequencies:

Populations Population SizeFrequency of AGGA(primary allele) Frequency of A(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 99.60% 0.40% 0.00% 0.00% NA
All Indica  492 99.40% 0.60% 0.00% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 99.40% 0.60% 0.00% 0.00% NA
Indica II  215 99.10% 0.90% 0.00% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 99.50% 0.50% 0.00% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 99.60% 0.40% 0.00% 0.00% NA