RiceVarMap2

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

AGGAAATGGAATTGGAATGTGCTTCTATGCCTTCCCAAAAAGGAAACAACATGGATGCTTAAGAAATTAAACCCGACAGATAAATTCAGCAGCATTTAGA[AAC/AAA]
AACAAAGTTATCTTTTAGGAAAACATTTCTCTTTTAGAATTATTATAAGATGCATTGGCAACATTTCAATGTTAAAGGTATTGAACCAAAAGGGATGTTG

Reverse complement sequence

CAACATCCCTTTTGGTTCAATACCTTTAACATTGAAATGTTGCCAATGCATCTTATAATAATTCTAAAAGAGAAATGTTTTCCTAAAAGATAACTTTGTT[GTT/TTT]
TCTAAATGCTGCTGAATTTATCTGTCGGGTTTAATTTCTTAAGCATCCATGTTGTTTCCTTTTTGGGAAGGCATAGAAGCACATTCCAATTCCATTTCCT

Allele Frequencies:

Search:

Populations	Population Size	Frequency of AAC(primary allele)	Frequency of AAA(secondary allele)	Frequency of N	Frequency of DEL	Frequency of others Allele
All	774	96.90%	0.40%	2.71%	0.00%	NA
All Indica	492	97.20%	0.40%	2.44%	0.00%	NA
All Japonica	244	96.70%	0.00%	3.28%	0.00%	NA
Aus	7	85.70%	14.30%	0.00%	0.00%	NA
Indica I	492	97.20%	0.40%	2.44%	0.00%	NA
Indica II	215	98.60%	0.00%	1.40%	0.00%	NA
Indica III	21	100.00%	0.00%	0.00%	0.00%	NA
Indica Intermediate	190	95.30%	1.10%	3.68%	0.00%	NA
Temperate Japonica	189	96.30%	0.00%	3.70%	0.00%	NA
Tropical Japonica	36	97.20%	0.00%	2.78%	0.00%	NA
Japonica Intermediate	19	100.00%	0.00%	0.00%	0.00%	NA
VI/Aromatic	9	100.00%	0.00%	0.00%	0.00%	NA
Intermediate	231	95.70%	0.90%	3.46%	0.00%	NA

Showing 1 to 13 of 13 entries

Contact

Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China

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Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

Reverse complement sequence

Allele Frequencies:

RiceVarMap v2.0

Tools

Blast

Design Primer by Variation ID

Design Primer by Region

Haplotype Network Analysis

Varitation Coordinate Convert

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