CGTAAGTTCCTTACCGCAGAGTCCGCGAACTGATCCGCCATGGCTGACCGGGACCAAACACCTGCAACTCTGGATCCAACGATGGATCAAACTCTGGCGA[AAAAAGAAAAAGAAAAAGAGGAGC/AAAAAGAAAAAGAAAAAAAGGAGC]
AATTCTTAATCGAGAAGGGGTTGTATCAATCTCCACCAAACCTCAATCCCTACCTCTCCTTTTTTAGATATTTTATTTAGCCTACGGCAGCTGCTGCACT
AGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATT[GCTCCTCTTTTTCTTTTTCTTTTT/GCTCCTTTTTTTCTTTTTCTTTTT]
TCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGGTAAGGAACTTACG
| Populations | Population Size | Frequency of AAAAAGAAAAAGAAAAAGAG GAGC(primary allele) | Frequency of AAAAAGAAAAAGAAAAAAAG GAGC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 98.70% | 0.30% | 1.03% | 0.00% | NA |
| All Indica | 492 | 98.60% | 0.00% | 1.42% | 0.00% | NA |
| All Japonica | 244 | 98.80% | 0.80% | 0.41% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 98.60% | 0.00% | 1.42% | 0.00% | NA |
| Indica II | 215 | 98.10% | 0.00% | 1.86% | 0.00% | NA |
| Indica III | 21 | 90.50% | 0.00% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 98.90% | 0.00% | 1.05% | 0.00% | NA |
| Temperate Japonica | 189 | 99.50% | 0.00% | 0.53% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 2.80% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 5.30% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 98.70% | 0.40% | 0.87% | 0.00% | NA |