Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TGCAACAGCGGCTGCGACAGCACTCACCGACAGATCTGGTGGGCATCATCACAAGGGTCTTATCTTCTTCGAGAGATAGCATGAGAGGGAATTGTGATTA[TT/TTT]
TTTTTATTTCTTATGGATGGTTCTTATGCATAAGGATAACTCATCCTAAGAACATCTATTAGGACTACTCCCATAGTATATAATGCCCACTTTAGAGGTC

Reverse complement sequence

GACCTCTAAAGTGGGCATTATATACTATGGGAGTAGTCCTAATAGATGTTCTTAGGATGAGTTATCCTTATGCATAAGAACCATCCATAAGAAATAAAAA[AA/AAA]
TAATCACAATTCCCTCTCATGCTATCTCTCGAAGAAGATAAGACCCTTGTGATGATGCCCACCAGATCTGTCGGTGAGTGCTGTCGCAGCCGCTGTTGCA

Allele Frequencies:

Populations Population SizeFrequency of TT(primary allele) Frequency of TTT(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 94.30% 4.90% 0.78% 0.00% NA
All Indica  492 99.80% 0.20% 0.00% 0.00% NA
All Japonica  244 83.20% 14.70% 2.46% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 99.80% 0.20% 0.00% 0.00% NA
Indica II  215 99.50% 0.50% 0.00% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 100.00% 0.00% 0.00% 0.00% NA
Temperate Japonica  189 97.90% 1.60% 0.53% 0.00% NA
Tropical Japonica  36 19.40% 69.40% 13.89% 0.00% NA
Japonica Intermediate  19 63.20% 36.80% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 96.10% 3.90% 0.00% 0.00% NA