Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


ATTGAAGAACAGATCATTGATCTTTGATCGGCTACTTCGATTTGACCTCATGGATAGTGGTTGAGGATTCTTGATCAAATCCTGAAGGCCAGCTTGTCGG[CGAC/CGAG]
GACGACCGGATTCTGCTTGGCGATCAGCTCCCTCCCGGAGCTCTTGTAGTCGAAGCCGCAGCCGTGCTCGTCGGCGTAGCGGTGGCCGCCGCAGAACGTG

Reverse complement sequence

CACGTTCTGCGGCGGCCACCGCTACGCCGACGAGCACGGCTGCGGCTTCGACTACAAGAGCTCCGGGAGGGAGCTGATCGCCAAGCAGAATCCGGTCGTC[GTCG/CTCG]
CCGACAAGCTGGCCTTCAGGATTTGATCAAGAATCCTCAACCACTATCCATGAGGTCAAATCGAAGTAGCCGATCAAAGATCAATGATCTGTTCTTCAAT

Allele Frequencies:

Populations Population SizeFrequency of CGAC(primary allele) Frequency of CGAG(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.60% 0.30% 1.16% 0.00% NA
All Indica  492 99.00% 0.00% 1.02% 0.00% NA
All Japonica  244 98.40% 0.80% 0.82% 0.00% NA
Aus  7 85.70% 0.00% 14.29% 0.00% NA
Indica I  492 99.00% 0.00% 1.02% 0.00% NA
Indica II  215 99.10% 0.00% 0.93% 0.00% NA
Indica III  21 95.20% 0.00% 4.76% 0.00% NA
Indica Intermediate  190 98.90% 0.00% 1.05% 0.00% NA
Temperate Japonica  189 98.90% 0.00% 1.06% 0.00% NA
Tropical Japonica  36 94.40% 5.60% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 98.70% 0.00% 1.30% 0.00% NA