CCGCTGAGCTCGGCTACTCCGGCAAGGACGACGTACGCCGTCCGCCACGCTAGCAGCAGCTCCAGGACCAGGCCCAGCTGAGCACTAACGGCACATGCGC[TG/TA]
TTGTTAAATTTGTTGTCGTAACTAACACGCATGCATGTATGTAAGACGGGGTGGCAGAATTGGTGTATATATAAAAAGGCTTTGAATAGCAATCCTGTTG
CAACAGGATTGCTATTCAAAGCCTTTTTATATATACACCAATTCTGCCACCCCGTCTTACATACATGCATGCGTGTTAGTTACGACAACAAATTTAACAA[CA/TA]
GCGCATGTGCCGTTAGTGCTCAGCTGGGCCTGGTCCTGGAGCTGCTGCTAGCGTGGCGGACGGCGTACGTCGTCCTTGCCGGAGTAGCCGAGCTCAGCGG
| Populations | Population Size | Frequency of TG(primary allele) | Frequency of TA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 54.90% | 40.20% | 8.14% | 0.00% | NA |
| All Indica | 492 | 38.40% | 56.10% | 8.94% | 0.00% | NA |
| All Japonica | 244 | 93.00% | 1.30% | 5.74% | 0.00% | NA |
| Aus | 7 | 71.40% | 16.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 38.40% | 56.10% | 8.94% | 0.00% | NA |
| Indica II | 215 | 35.20% | 60.00% | 7.44% | 0.00% | NA |
| Indica III | 21 | 27.80% | 61.90% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 33.90% | 60.50% | 8.42% | 0.00% | NA |
| Temperate Japonica | 189 | 92.60% | 0.60% | 6.88% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 2.90% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 5.30% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 42.70% | 52.40% | 8.66% | 0.00% | NA |