ATAGCTGCTACTAGATACTCCCTCTATTTTTTAATAGACGACGCCGTTGACTTTTTCTTCCATATTTGACTATTCGTCTTATTCAAAAAATTTTATGTAA[ATA/ATG]
TATAAAATATAAATCACACTTAAAGTATTATGAGTAATAAAACAACTCATAACAAAATAAATTACAATTACGTAAATTTTTTGAATAAGACAAATGGTCA
TGACCATTTGTCTTATTCAAAAAATTTACGTAATTGTAATTTATTTTGTTATGAGTTGTTTTATTACTCATAATACTTTAAGTGTGATTTATATTTTATA[TAT/CAT]
TTACATAAAATTTTTTGAATAAGACGAATAGTCAAATATGGAAGAAAAAGTCAACGGCGTCGTCTATTAAAAAATAGAGGGAGTATCTAGTAGCAGCTAT
| Populations | Population Size | Frequency of ATA(primary allele) | Frequency of ATG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 92.90% | 2.60% | 4.65% | 0.00% | NA |
| All Indica | 492 | 93.30% | 3.80% | 3.05% | 0.00% | NA |
| All Japonica | 244 | 93.90% | 0.00% | 6.15% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 93.30% | 3.80% | 3.05% | 0.00% | NA |
| Indica II | 215 | 88.40% | 8.20% | 3.72% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 96.30% | 0.50% | 3.16% | 0.00% | NA |
| Temperate Japonica | 189 | 92.60% | 0.00% | 7.41% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 94.40% | 0.90% | 4.76% | 0.00% | NA |