Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CGGCGGCCGGAGGAGGTCACGGACTGGCTGTCGCGGGTGGACGGCGCCGAGAAGCGGGTGGCCAAGCTCCGGCGAGAGTACCAGCGCCGGTGTTGCTCCT[GCGGCGGCGGCGGCG/GCGGCGGCGGCG]
CCTTCTCGCTCAACCTGTTCGCGAGCTACGCCATTAGCCGGCGCGCGTGCCACGAGCGCCACCGTCTCGCCGCGCTGCTCGGGGAGTGCGACAGGGTGAG

Reverse complement sequence

CTCACCCTGTCGCACTCCCCGAGCAGCGCGGCGAGACGGTGGCGCTCGTGGCACGCGCGCCGGCTAATGGCGTAGCTCGCGAACAGGTTGAGCGAGAAGG[CGCCGCCGCCGCCGC/CGCCGCCGCCGC]
AGGAGCAACACCGGCGCTGGTACTCTCGCCGGAGCTTGGCCACCCGCTTCTCGGCGCCGTCCACCCGCGACAGCCAGTCCGTGACCTCCTCCGGCCGCCG

Allele Frequencies:

Populations Population SizeFrequency of GCGGCGGCGGCGGCG(primary allele) Frequency of GCGGCGGCGGCG(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 95.90% 1.90% 2.33% 0.00% NA
All Indica  492 97.00% 0.20% 2.85% 0.00% NA
All Japonica  244 98.80% 0.00% 1.23% 0.00% NA
Aus  7 14.30% 85.70% 0.00% 0.00% NA
Indica I  492 97.00% 0.20% 2.85% 0.00% NA
Indica II  215 96.70% 0.00% 3.26% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 96.30% 0.50% 3.16% 0.00% NA
Temperate Japonica  189 98.90% 0.00% 1.06% 0.00% NA
Tropical Japonica  36 97.20% 0.00% 2.78% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 22.20% 77.80% 0.00% 0.00% NA
Intermediate  231 96.50% 0.40% 3.03% 0.00% NA