ACCACGCACCGACTTGGTAGAGGCGGCCCTCCGGGGAGAAGATGGTGATGTGGCGGTCGTAGCCGGCGCCCGTGCCGCGGCTCATCGTCGCCGGATTTCT[CGCCGCCGC/CG]
GGGTGGGGTTTCGCGTTCGCTTTGCTCCGAGAGAATACGGCGAGGCTTGTGTTTGTGCTTGGTTGGGGAGGCAAAATAAACCAAAAATAGAAAATAGACG
CGTCTATTTTCTATTTTTGGTTTATTTTGCCTCCCCAACCAAGCACAAACACAAGCCTCGCCGTATTCTCTCGGAGCAAAGCGAACGCGAAACCCCACCC[GCGGCGGCG/CG]
AGAAATCCGGCGACGATGAGCCGCGGCACGGGCGCCGGCTACGACCGCCACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGGTGCGTGGT
| Populations | Population Size | Frequency of CGCCGCCGC(primary allele) | Frequency of CG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 89.00% | 9.50% | 1.68% | 0.00% | NA |
| All Indica | 492 | 96.30% | 2.70% | 1.02% | 0.00% | NA |
| All Japonica | 244 | 75.00% | 22.80% | 2.87% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 96.30% | 2.70% | 1.02% | 0.00% | NA |
| Indica II | 215 | 93.50% | 5.20% | 1.40% | 0.00% | NA |
| Indica III | 21 | 95.20% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 97.90% | 1.10% | 1.05% | 0.00% | NA |
| Temperate Japonica | 189 | 90.50% | 7.10% | 2.65% | 0.00% | NA |
| Tropical Japonica | 36 | 8.80% | 86.10% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 47.40% | 52.60% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 91.30% | 7.50% | 1.30% | 0.00% | NA |