Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CCGCCTCCTCTTCCACGACTGCTTCGCCAATGTACGTTCACGTTCTACGACCTTGCCCGCCGCCGGCAATGGCGGATGCTGACTTGCATGTGATGTTGGA[TGCGTGCGTGCGTGT/TGCGTGTGTGCGTGT]
GCGTGTGTGGGTGGTGTAGGGATGCGACGCGTCGATCTTGATCGACCCGCTGTCGAACCAGAGCGCGGAGAAGGAGGCGGGGCCGAACATCTCGGTGAAG

Reverse complement sequence

CTTCACCGAGATGTTCGGCCCCGCCTCCTTCTCCGCGCTCTGGTTCGACAGCGGGTCGATCAAGATCGACGCGTCGCATCCCTACACCACCCACACACGC[ACACGCACGCACGCA/ACACGCACACACGCA]
TCCAACATCACATGCAAGTCAGCATCCGCCATTGCCGGCGGCGGGCAAGGTCGTAGAACGTGAACGTACATTGGCGAAGCAGTCGTGGAAGAGGAGGCGG

Allele Frequencies:

Populations Population SizeFrequency of TGCGTGCGTGCGTGT(primary allele) Frequency of TGCGTGTGTGCGTGT(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.60% 0.70% 0.78% 0.00% NA
All Indica  492 98.60% 0.40% 1.02% 0.00% NA
All Japonica  244 99.60% 0.00% 0.41% 0.00% NA
Aus  7 57.10% 42.90% 0.00% 0.00% NA
Indica I  492 98.60% 0.40% 1.02% 0.00% NA
Indica II  215 99.10% 0.00% 0.93% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 97.40% 1.10% 1.58% 0.00% NA
Temperate Japonica  189 99.50% 0.00% 0.53% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 97.80% 0.90% 1.30% 0.00% NA