GTTCTTGTTCATCGGTTTCTTTGGCTGTTTGCTCCGGTTGTATTCTTGTTCATCGAATTGATACGCAGATCTCTAATCTTATCTTCTTCTGCGATAATGG[GTTGTTG/G]
GACTTGGATATGATCAGTCTGATGGACCAGGAAGTGAGCTGTCAAAAACTGTGAATTTCCATTTGAAGAAGGGAAAGATCCTTTTTTTTTTCTAGTGTAT
ATACACTAGAAAAAAAAAAGGATCTTTCCCTTCTTCAAATGGAAATTCACAGTTTTTGACAGCTCACTTCCTGGTCCATCAGACTGATCATATCCAAGTC[CAACAAC/C]
CCATTATCGCAGAAGAAGATAAGATTAGAGATCTGCGTATCAATTCGATGAACAAGAATACAACCGGAGCAAACAGCCAAAGAAACCGATGAACAAGAAC
| Populations | Population Size | Frequency of G(primary allele) | Frequency of GTTGTTG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 80.60% | 16.50% | 3.49% | 0.00% | NA |
| All Indica | 492 | 96.10% | 1.50% | 2.44% | 0.00% | NA |
| All Japonica | 244 | 47.50% | 49.30% | 6.15% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 96.10% | 1.50% | 2.44% | 0.00% | NA |
| Indica II | 215 | 94.40% | 3.30% | 2.33% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 97.90% | 0.00% | 2.11% | 0.00% | NA |
| Temperate Japonica | 189 | 44.30% | 51.90% | 6.88% | 0.00% | NA |
| Tropical Japonica | 36 | 75.00% | 20.60% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 57.90% | 42.10% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 93.50% | 4.80% | 1.73% | 0.00% | NA |