AGCGCCGCGTCCTCCTCGGCGGTGAGGTTGCACACGACGAACCGGACGTGGACCACGGCGCGGGCGGGCGCCGGCTGGAGCGCGTAGGCGAGGCGGACCA[GC/GA]
GCGCGCCGCTCGTACTTGTCGGCGCGGGTGAGCACGCCGAGGAGCACGCGGATGTCCGGGGCCGCCTTCGCCACCGCGTCGGCCGCCGTCGCCGGCGCGC
GCGCGCCGGCGACGGCGGCCGACGCGGTGGCGAAGGCGGCCCCGGACATCCGCGTGCTCCTCGGCGTGCTCACCCGCGCCGACAAGTACGAGCGGCGCGC[GC/TC]
TGGTCCGCCTCGCCTACGCGCTCCAGCCGGCGCCCGCCCGCGCCGTGGTCCACGTCCGGTTCGTCGTGTGCAACCTCACCGCCGAGGAGGACGCGGCGCT
| Populations | Population Size | Frequency of GC(primary allele) | Frequency of GA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 96.90% | 1.30% | 1.81% | 0.00% | NA |
| All Indica | 492 | 97.00% | 0.60% | 2.44% | 0.00% | NA |
| All Japonica | 244 | 99.20% | 0.00% | 0.82% | 0.00% | NA |
| Aus | 7 | 28.60% | 71.40% | 0.00% | 0.00% | NA |
| Indica I | 492 | 97.00% | 0.60% | 2.44% | 0.00% | NA |
| Indica II | 215 | 97.70% | 0.50% | 1.86% | 0.00% | NA |
| Indica III | 21 | 95.20% | 4.80% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 97.40% | 1.10% | 1.58% | 0.00% | NA |
| Temperate Japonica | 189 | 98.90% | 0.00% | 1.06% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 97.40% | 1.30% | 1.30% | 0.00% | NA |