AGAGAGAGAGAGAGAGAGAGGAAGGAAGAAAGAGAGAGAGAAAGAAAAAAAAAACAGCTTTGGCAGAAGGCTAGAAGCAGCTCAAACAAAATTGCCCCCC[AA/A]
AAAAGGCTGCAAAAGCCCTTAAGAAAGGGGGTTTAGCAGCAAGGGCAGTGGAGGTGTCCCCACCCTGCCAGGACAGAAGAAAAGCCCAGCACAGAAGCTT
AAGCTTCTGTGCTGGGCTTTTCTTCTGTCCTGGCAGGGTGGGGACACCTCCACTGCCCTTGCTGCTAAACCCCCTTTCTTAAGGGCTTTTGCAGCCTTTT[TT/T]
GGGGGGCAATTTTGTTTGAGCTGCTTCTAGCCTTCTGCCAAAGCTGTTTTTTTTTTCTTTCTCTCTCTCTTTCTTCCTTCCTCTCTCTCTCTCTCTCTCT
| Populations | Population Size | Frequency of AA(primary allele) | Frequency of A(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 96.60% | 1.80% | 1.55% | 0.00% | NA |
| All Indica | 492 | 99.00% | 0.20% | 0.81% | 0.00% | NA |
| All Japonica | 244 | 91.80% | 5.10% | 3.28% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 99.00% | 0.20% | 0.81% | 0.00% | NA |
| Indica II | 215 | 99.10% | 0.00% | 0.93% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 98.40% | 0.50% | 1.05% | 0.00% | NA |
| Temperate Japonica | 189 | 90.50% | 6.60% | 3.17% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 0.00% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 97.80% | 0.40% | 1.73% | 0.00% | NA |