Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CGCCACCCGCGTGGCGTCTTCTGGAACGGCTCGCTGGTGTGGGCGATGCTGTCGCCTCGCCTCCTCCGCTTCGCCATCGACAGCGGGGAGCTGAGCGAGA[TGCCGCTGCCG/TGCCGCTGCCA]
CCGAGGCTGCGGTCCGAGGGCTGGTTCCACGCCGGGTGGGTGTACGCCTACGTCGGCGAGTCCGGCGGCCGGCTGCAGGTGATCGGGTACACCGACGAGG

Reverse complement sequence

CCTCGTCGGTGTACCCGATCACCTGCAGCCGGCCGCCGGACTCGCCGACGTAGGCGTACACCCACCCGGCGTGGAACCAGCCCTCGGACCGCAGCCTCGG[CGGCAGCGGCA/TGGCAGCGGCA]
TCTCGCTCAGCTCCCCGCTGTCGATGGCGAAGCGGAGGAGGCGAGGCGACAGCATCGCCCACACCAGCGAGCCGTTCCAGAAGACGCCACGCGGGTGGCG

Allele Frequencies:

Populations Population SizeFrequency of TGCCGCTGCCG(primary allele) Frequency of TGCCGCTGCCA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.70% 0.40% 0.90% 0.00% NA
All Indica  492 99.20% 0.00% 0.81% 0.00% NA
All Japonica  244 97.50% 1.20% 1.23% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 99.20% 0.00% 0.81% 0.00% NA
Indica II  215 98.60% 0.00% 1.40% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 99.50% 0.00% 0.53% 0.00% NA
Temperate Japonica  189 97.40% 1.10% 1.59% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 94.70% 5.30% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 99.10% 0.40% 0.43% 0.00% NA