TATTCATACGTTAGAAGTCAAAAAAATACGGAGAAATCTTCATCTCTCCCTCTGTCACTGCCGGCCTCCGGCGCGGCCGTCTCTACGGCCGCCGTCTCGC[CGGCGGCGGCGGCG/CGGCG]
GTCGACGCAGCGAACGCCTCGTGCAGCACCTTCTCCACGTCGAGCGCCTCGGCGGCGGCGCCCGCGTCGTCGTCGTCGGGCGTCGGGATGAACGGCGGCC
GGCCGCCGTTCATCCCGACGCCCGACGACGACGACGCGGGCGCCGCCGCCGAGGCGCTCGACGTGGAGAAGGTGCTGCACGAGGCGTTCGCTGCGTCGAC[CGCCGCCGCCGCCG/CGCCG]
GCGAGACGGCGGCCGTAGAGACGGCCGCGCCGGAGGCCGGCAGTGACAGAGGGAGAGATGAAGATTTCTCCGTATTTTTTTGACTTCTAACGTATGAATA
| Populations | Population Size | Frequency of CGGCGGCGGCGGCG(primary allele) | Frequency of CGGCG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 54.00% | 37.40% | 13.70% | 0.00% | NA |
| All Indica | 492 | 43.30% | 48.40% | 14.63% | 0.00% | NA |
| All Japonica | 244 | 86.10% | 2.30% | 11.89% | 0.00% | NA |
| Aus | 7 | 57.10% | 33.30% | 14.29% | 0.00% | NA |
| Indica I | 492 | 43.30% | 48.40% | 14.63% | 0.00% | NA |
| Indica II | 215 | 42.00% | 50.70% | 12.56% | 0.00% | NA |
| Indica III | 21 | 42.10% | 52.40% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 40.90% | 47.90% | 18.95% | 0.00% | NA |
| Temperate Japonica | 189 | 87.80% | 1.20% | 11.11% | 0.00% | NA |
| Tropical Japonica | 36 | 83.30% | 9.10% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 73.70% | 0.00% | 26.32% | 0.00% | NA |
| VI/Aromatic | 9 | 77.80% | 22.20% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 49.50% | 40.70% | 19.48% | 0.00% | NA |