TCCAGGAAGTACTCGTTCTTGAGCTTGGACACCATCGCTATCTATGGCGACGAGATGAAGATGAGCAAAAAGCTAAGATGGCTCATGTCGCGAGGAGGAG[GAAG/GAAGAAG]
AAGAAGAAGTGGGGTGTTTTGGGGCACACCTGGGCGGAGAACTCGGAGTCGGTCTCCTGGGAGGCGCCGGGGTCGAGCTTCTTGATGACGGCGGCGCGGC
GCCGCGCCGCCGTCATCAAGAAGCTCGACCCCGGCGCCTCCCAGGAGACCGACTCCGAGTTCTCCGCCCAGGTGTGCCCCAAAACACCCCACTTCTTCTT[CTTC/CTTCTTC]
CTCCTCCTCGCGACATGAGCCATCTTAGCTTTTTGCTCATCTTCATCTCGTCGCCATAGATAGCGATGGTGTCCAAGCTCAAGAACGAGTACTTCCTGGA
| Populations | Population Size | Frequency of GAAGAAG(primary allele) | Frequency of GAAG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 59.70% | 35.20% | 7.88% | 0.00% | NA |
| All Indica | 492 | 89.20% | 3.10% | 7.93% | 0.00% | NA |
| All Japonica | 244 | 3.60% | 88.90% | 7.79% | 0.00% | NA |
| Aus | 7 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica I | 492 | 89.20% | 3.10% | 7.93% | 0.00% | NA |
| Indica II | 215 | 90.70% | 3.00% | 6.51% | 0.00% | NA |
| Indica III | 21 | 81.00% | 5.60% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 90.50% | 3.40% | 6.32% | 0.00% | NA |
| Temperate Japonica | 189 | 2.90% | 89.40% | 7.94% | 0.00% | NA |
| Tropical Japonica | 36 | 3.00% | 88.90% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 11.10% | 84.20% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 79.20% | 14.90% | 6.93% | 0.00% | NA |