Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TGGTAGGCCAGCATGCGGTTGCCGTCTTCCAAGCAGTAGCCCAAGAGCTCCAGGAAGTACTCGTTCTTGAGCTTGGACACCATCGCTATCTATGGCGACG[AGATGAAGATGAGCA/AGATGGAGATGAGCA]
AAAAGCTAAGATGGCTCATGTCGCGAGGAGGAGGAAGAAGAAGAAGTGGGGTGTTTTGGGGCACACCTGGGCGGAGAACTCGGAGTCGGTCTCCTGGGAG

Reverse complement sequence

CTCCCAGGAGACCGACTCCGAGTTCTCCGCCCAGGTGTGCCCCAAAACACCCCACTTCTTCTTCTTCCTCCTCCTCGCGACATGAGCCATCTTAGCTTTT[TGCTCATCTTCATCT/TGCTCATCTCCATCT]
CGTCGCCATAGATAGCGATGGTGTCCAAGCTCAAGAACGAGTACTTCCTGGAGCTCTTGGGCTACTGCTTGGAAGACGGCAACCGCATGCTGGCCTACCA

Allele Frequencies:

Populations Population SizeFrequency of AGATGAAGATGAGCA(primary allele) Frequency of AGATGGAGATGAGCA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.20% 0.90% 0.90% 0.00% NA
All Indica  492 97.80% 1.20% 1.02% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 85.70% 14.30% 0.00% 0.00% NA
Indica I  492 97.80% 1.20% 1.02% 0.00% NA
Indica II  215 98.10% 1.90% 0.00% 0.00% NA
Indica III  21 95.20% 4.80% 0.00% 0.00% NA
Indica Intermediate  190 96.80% 1.10% 2.11% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 96.50% 0.90% 2.60% 0.00% NA