CTGCATTCTTCAAGCTTGCAGCAACTTGTGCATTCACATGTGCAGCCTCTTCTCCAGCAATTAACCCATTCTTCTTCAAATATTTCATGTATCTTTCCTC[CCAAAA/CCAAAC]
CCAAAAGTTACACCCAGATCCATCTTTCTACACCATTAAGAACAAATGTCACCTCAAACTGAACTCAACACCACAACACACCAAATTCAATCAACTATTG
CAATAGTTGATTGAATTTGGTGTGTTGTGGTGTTGAGTTCAGTTTGAGGTGACATTTGTTCTTAATGGTGTAGAAAGATGGATCTGGGTGTAACTTTTGG[TTTTGG/GTTTGG]
GAGGAAAGATACATGAAATATTTGAAGAAGAATGGGTTAATTGCTGGAGAAGAGGCTGCACATGTGAATGCACAAGTTGCTGCAAGCTTGAAGAATGCAG
| Populations | Population Size | Frequency of CCAAAC(primary allele) | Frequency of CCAAAA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 56.60% | 38.90% | 7.36% | 0.00% | NA |
| All Indica | 492 | 84.60% | 9.80% | 6.30% | 0.00% | NA |
| All Japonica | 244 | 2.30% | 88.50% | 9.43% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 84.60% | 9.80% | 6.30% | 0.00% | NA |
| Indica II | 215 | 80.00% | 15.30% | 5.58% | 0.00% | NA |
| Indica III | 21 | 95.20% | 4.80% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 84.70% | 8.00% | 7.89% | 0.00% | NA |
| Temperate Japonica | 189 | 2.30% | 88.90% | 8.99% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 88.90% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 5.90% | 84.20% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 74.50% | 18.50% | 8.66% | 0.00% | NA |