TATCCACCCCGCCCGTGGCGAAACGCGTGCGCCTTTTTGGAGTCTACATCGACGTTCCTCCACTGCGCCCAGGCGGCGAGGCAACACAAGATTTCAACCC[ATGATGATG/ATGATGAT]
GCGTGCCATCCGTGGACAGGAACGCCCTCAAGAGGAGGCGAGCTGCTGCGGACAATTAACGCCTCCTGATCGAATTGTATCGTTTAGATTGCAAGTTCTG
CAGAACTTGCAATCTAAACGATACAATTCGATCAGGAGGCGTTAATTGTCCGCAGCAGCTCGCCTCCTCTTGAGGGCGTTCCTGTCCACGGATGGCACGC[CATCATCAT/ATCATCAT]
GGGTTGAAATCTTGTGTTGCCTCGCCGCCTGGGCGCAGTGGAGGAACGTCGATGTAGACTCCAAAAAGGCGCACGCGTTTCGCCACGGGCGGGGTGGATA
| Populations | Population Size | Frequency of ATGATGATG(primary allele) | Frequency of ATGATGAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 98.20% | 1.20% | 0.65% | 0.00% | NA |
| All Indica | 492 | 97.40% | 1.80% | 0.81% | 0.00% | NA |
| All Japonica | 244 | 99.60% | 0.00% | 0.41% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 97.40% | 1.80% | 0.81% | 0.00% | NA |
| Indica II | 215 | 99.10% | 0.50% | 0.47% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 94.70% | 4.30% | 1.05% | 0.00% | NA |
| Temperate Japonica | 189 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 95.20% | 3.50% | 1.30% | 0.00% | NA |