GCGCCGTTCTCCGCGTCTCGCCTGAACGCTTCCGCGGCGCCCGGCTCCATCTCCGGGAAGCTGTTCACCAAGAAGCCATCGGCGCCGCCGTATCGCCGCC[CC/CT]
TCCTCGAGCACGTAGGCGTAGTTCGGATCGGCGCAATCCTGGAACCCGTCAGGAATTTCGTCGTGGCGGAGCGGCGCGCAACCGGGGAGCACGAGCGGGT
ACCCGCTCGTGCTCCCCGGTTGCGCGCCGCTCCGCCACGACGAAATTCCTGACGGGTTCCAGGATTGCGCCGATCCGAACTACGCCTACGTGCTCGAGGA[GG/AG]
GGCGGCGATACGGCGGCGCCGATGGCTTCTTGGTGAACAGCTTCCCGGAGATGGAGCCGGGCGCCGCGGAAGCGTTCAGGCGAGACGCGGAGAACGGCGC
| Populations | Population Size | Frequency of CT(primary allele) | Frequency of CC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 46.30% | 47.40% | 12.02% | 0.00% | NA |
| All Indica | 492 | 65.20% | 24.50% | 13.62% | 0.00% | NA |
| All Japonica | 244 | 4.50% | 87.30% | 8.61% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 65.20% | 24.50% | 13.62% | 0.00% | NA |
| Indica II | 215 | 80.00% | 10.90% | 10.23% | 0.00% | NA |
| Indica III | 21 | 81.00% | 10.50% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 56.80% | 31.60% | 16.84% | 0.00% | NA |
| Temperate Japonica | 189 | 5.10% | 87.80% | 7.41% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 86.10% | 13.89% | 0.00% | NA |
| Japonica Intermediate | 19 | 5.90% | 84.20% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 51.90% | 37.50% | 16.88% | 0.00% | NA |