AGATGGACTTTTGAAACAGATACTGCTCATTCCGTTTTATATTATAAAGCGTTTTGATTTTTTTTAAAATTTAAACTTTTTTAAGTTTGATTAAATTCGT[AA/A,AAA]
AAAAAATATAGTAACAAACCTAAAGAATTTTGATTTAAAAAATCAAAACAAATTGTAATATGAGATGGATGGAGAGCATATGACATTTCTTCGCCGATCT
AGATCGGCGAAGAAATGTCATATGCTCTCCATCCATCTCATATTACAATTTGTTTTGATTTTTTAAATCAAAATTCTTTAGGTTTGTTACTATATTTTTT[TT/T,TTT]
ACGAATTTAATCAAACTTAAAAAAGTTTAAATTTTAAAAAAAATCAAAACGCTTTATAATATAAAACGGAATGAGCAGTATCTGTTTCAAAAGTCCATCT
| Populations | Population Size | Frequency of AA(primary allele) | Frequency of AAA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 49.60% | 1.20% | 6.46% | 0.00% | NA |
| All Indica | 492 | 0.00% | 1.50% | 7.32% | 0.00% | NA; AAA: 64.00% |
| All Japonica | 244 | 91.00% | 0.00% | 4.51% | 0.00% | NA; A: 4.70% |
| Aus | 7 | 57.10% | 33.30% | 14.29% | 0.00% | NA |
| Indica I | 492 | 0.00% | 1.50% | 7.32% | 0.00% | NA; AAA: 64.00% |
| Indica II | 215 | 37.20% | 0.00% | 8.84% | 0.00% | NA; AA: 57.20% |
| Indica III | 21 | 38.10% | 0.00% | 0.00% | 0.00% | NA; AA: 61.90% |
| Indica Intermediate | 190 | 0.00% | 2.20% | 6.32% | 0.00% | NA; AAA: 61.10% |
| Temperate Japonica | 189 | 90.50% | 0.00% | 4.76% | 0.00% | NA; A: 5.00% |
| Tropical Japonica | 36 | 91.70% | 0.00% | 5.56% | 0.00% | NA; A: 2.90% |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 0.00% | 0.00% | NA; A: 5.30% |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 0.00% | 1.80% | 5.63% | 0.00% | NA; AAA: 52.80% |