Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


GCTACTGCACAACTGTTAGACACAAATGCATGTGCACCAAAGCGTGTGGAGGGGAGAGTCCGCCTGATGATCCGCCGTCGGCGATGCCGGCATCGCCAGT[GACGACGAC/GACGAC]
AAGAGCCTGATCGCTGAAAATATATATGTTGCAATGGAGAATTAGTGAGATGTACTTGCTGAAATTAATGGATTGCAAACAATAAAGAAAGATGATTCAC

Reverse complement sequence

GTGAATCATCTTTCTTTATTGTTTGCAATCCATTAATTTCAGCAAGTACATCTCACTAATTCTCCATTGCAACATATATATTTTCAGCGATCAGGCTCTT[GTCGTCGTC/GTCGTC]
ACTGGCGATGCCGGCATCGCCGACGGCGGATCATCAGGCGGACTCTCCCCTCCACACGCTTTGGTGCACATGCATTTGTGTCTAACAGTTGTGCAGTAGC

Allele Frequencies:

Populations Population SizeFrequency of GACGACGAC(primary allele) Frequency of GACGAC(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 99.20% 0.50% 0.26% 0.00% NA
All Indica  492 99.20% 0.40% 0.41% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 71.40% 28.60% 0.00% 0.00% NA
Indica I  492 99.20% 0.40% 0.41% 0.00% NA
Indica II  215 98.10% 0.90% 0.93% 0.00% NA
Indica III  21 85.70% 5.30% 9.52% 0.00% NA
Indica Intermediate  190 100.00% 0.00% 0.00% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 100.00% 0.00% 0.00% 0.00% NA