CTGTGAAGTTGTTGTGCTTGAGGTTGATGATCTTGAGACTTGTAAAGTTGCTTAGAGATGATGGAAACACTCTGGACATCCTGTTGTTATCCAACTGGAG[CTCCTC/CTCCTA]
CAATCTATTAAGCTGACCTATGGAACCCGGAATATCACCGATGAAGTTGTTATGCTTGATGCCGATGATTTTGAGACTAGTACAGTTGCCTAGAGCTGAT
ATCAGCTCTAGGCAACTGTACTAGTCTCAAAATCATCGGCATCAAGCATAACAACTTCATCGGTGATATTCCGGGTTCCATAGGTCAGCTTAATAGATTG[GAGGAG/TAGGAG]
CTCCAGTTGGATAACAACAGGATGTCCAGAGTGTTTCCATCATCTCTAAGCAACTTTACAAGTCTCAAGATCATCAACCTCAAGCACAACAACTTCACAG
| Populations | Population Size | Frequency of CTCCTC(primary allele) | Frequency of CTCCTA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 97.50% | 0.70% | 1.81% | 0.00% | NA |
| All Indica | 492 | 98.40% | 0.20% | 1.42% | 0.00% | NA |
| All Japonica | 244 | 98.80% | 0.00% | 1.23% | 0.00% | NA |
| Aus | 7 | 42.90% | 57.10% | 0.00% | 0.00% | NA |
| Indica I | 492 | 98.40% | 0.20% | 1.42% | 0.00% | NA |
| Indica II | 215 | 99.10% | 0.00% | 0.93% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 96.80% | 0.50% | 2.63% | 0.00% | NA |
| Temperate Japonica | 189 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 0.00% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 77.80% | 0.00% | 22.22% | 0.00% | NA |
| Intermediate | 231 | 95.70% | 0.50% | 3.90% | 0.00% | NA |