GTCACTAGTGGCAGCAAATCCGCCATAGATGTCTCCCATGTTTAGCAGGTCAAAGTAGCCGCCGCCTCCTGCCATTGGAGCAGCAGCAGCTGAGCTCTGA[TGCTGCTG/TGCTGTTG]
CTGCAATGCGCCGTAGCTGCCGCTCATCTGGTCCCCGAACGCGCCGCCGTGCGACGGCGTCACGTTGCCGGAGCTCGCCGTGGACGCCGGCCAGTGCTGC
GCAGCACTGGCCGGCGTCCACGGCGAGCTCCGGCAACGTGACGCCGTCGCACGGCGGCGCGTTCGGGGACCAGATGAGCGGCAGCTACGGCGCATTGCAG[CAGCAGCA/CAACAGCA]
TCAGAGCTCAGCTGCTGCTGCTCCAATGGCAGGAGGCGGCGGCTACTTTGACCTGCTAAACATGGGAGACATCTATGGCGGATTTGCTGCCACTAGTGAC
| Populations | Population Size | Frequency of TGCTGCTG(primary allele) | Frequency of TGCTGTTG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 80.20% | 15.40% | 5.17% | 0.00% | NA |
| All Indica | 492 | 84.30% | 12.40% | 3.66% | 0.00% | NA |
| All Japonica | 244 | 77.00% | 17.50% | 6.56% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 84.30% | 12.40% | 3.66% | 0.00% | NA |
| Indica II | 215 | 76.30% | 20.80% | 3.72% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 86.80% | 8.80% | 4.74% | 0.00% | NA |
| Temperate Japonica | 189 | 88.90% | 8.70% | 2.65% | 0.00% | NA |
| Tropical Japonica | 36 | 18.50% | 61.10% | 25.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 78.90% | 11.80% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 83.10% | 10.70% | 6.93% | 0.00% | NA |