CTATACTGATCAGGAGGCGCTTGGTGCAGTGCCACTCCCTCCAGGTTGAGCTGTGGTAGTAGCAGCTGCACCGCCACCGCTGCCCGCGTCTCCACCACCG[GCAGCTGCAGCTGCAG/G]
CAGAAGACGAGCCGGACGGCTCGACGCCGGCGGGCTGCGCCGCCTGCGAGCGCTTGCGCTTCTTCTTCTCGTACGGGATGCCGCGCGCCTTGGCCTGCGA
TCGCAGGCCAAGGCGCGCGGCATCCCGTACGAGAAGAAGAAGCGCAAGCGCTCGCAGGCGGCGCAGCCCGCCGGCGTCGAGCCGTCCGGCTCGTCTTCTG[CTGCAGCTGCAGCTGC/C]
CGGTGGTGGAGACGCGGGCAGCGGTGGCGGTGCAGCTGCTACTACCACAGCTCAACCTGGAGGGAGTGGCACTGCACCAAGCGCCTCCTGATCAGTATAG
| Populations | Population Size | Frequency of GCAGCTGCAGCTGCAG(primary allele) | Frequency of G(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 86.80% | 2.60% | 10.85% | 0.00% | NA |
| All Indica | 492 | 85.60% | 3.20% | 11.59% | 0.00% | NA |
| All Japonica | 244 | 91.40% | 0.00% | 8.61% | 0.00% | NA |
| Aus | 7 | 33.30% | 57.10% | 14.29% | 0.00% | NA |
| Indica I | 492 | 85.60% | 3.20% | 11.59% | 0.00% | NA |
| Indica II | 215 | 87.00% | 2.60% | 10.70% | 0.00% | NA |
| Indica III | 21 | 76.20% | 15.80% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 82.10% | 4.30% | 14.21% | 0.00% | NA |
| Temperate Japonica | 189 | 91.50% | 0.00% | 8.47% | 0.00% | NA |
| Tropical Japonica | 36 | 91.70% | 0.00% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 0.00% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 82.70% | 3.50% | 14.29% | 0.00% | NA |