TTGATGGAGTGAGCTAGCCAAGTACCTTCTGTGATCTCTTTCCCACACGATCGAGCTGGATTAGTATTTCGGGAGATGAGATGAGGAGGAGGAGGAGAAT[CAACAAC/CAAC]
AGCAAGTGGAGTTGAGCCGTAGTAGTAGTAGCAGTAGACAGCGATCCGTCGCGAGATGCCACGAGAGATTTATAATGGGTGCAACACCAACACCGGCACA
TGTGCCGGTGTTGGTGTTGCACCCATTATAAATCTCTCGTGGCATCTCGCGACGGATCGCTGTCTACTGCTACTACTACTACGGCTCAACTCCACTTGCT[GTTGTTG/GTTG]
ATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAAGGTACTTGGCTAGCTCACTCCATCAA
| Populations | Population Size | Frequency of CAAC(primary allele) | Frequency of CAACAAC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 60.70% | 37.00% | 3.62% | 0.00% | NA |
| All Indica | 492 | 91.50% | 5.90% | 2.85% | 0.00% | NA |
| All Japonica | 244 | 3.00% | 92.60% | 4.51% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 91.50% | 5.90% | 2.85% | 0.00% | NA |
| Indica II | 215 | 98.60% | 0.00% | 1.40% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 88.40% | 7.70% | 4.21% | 0.00% | NA |
| Temperate Japonica | 189 | 2.80% | 92.60% | 4.76% | 0.00% | NA |
| Tropical Japonica | 36 | 5.90% | 88.90% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 11.10% | 88.90% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 74.90% | 21.40% | 4.76% | 0.00% | NA |