Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CGATGCCGTCGAGCACCGCGTCGCCGAGGGGGCGCGAGTCCGAGCTGCCGCCGAGGAAGGTGTTCCAGAGGTAGTCGGCGACGCCACGCGCGTCGTCGGC[GGAG/G]
GAGAGGGAGTACTGACCTCTCTCGCCGCCGAGGGAGAGGAGCACCTTCACGCCGCTCTGCTGGCAGGAGCTGATCTCGGAGCTGAGCGACTTGCAGGTCC

Reverse complement sequence

GGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCAGCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTC[CTCC/C]
GCCGACGACGCGCGTGGCGTCGCCGACTACCTCTGGAACACCTTCCTCGGCGGCAGCTCGGACTCGCGCCCCCTCGGCGACGCGGTGCTCGACGGCATCG

Allele Frequencies:

Populations Population SizeFrequency of GGAG(primary allele) Frequency of G(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 96.40% 1.70% 1.94% 0.00% NA
All Indica  492 94.90% 2.70% 2.44% 0.00% NA
All Japonica  244 99.20% 0.00% 0.82% 0.00% NA
Aus  7 85.70% 0.00% 14.29% 0.00% NA
Indica I  492 94.90% 2.70% 2.44% 0.00% NA
Indica II  215 98.60% 0.50% 0.93% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 93.20% 3.80% 3.16% 0.00% NA
Temperate Japonica  189 99.50% 0.00% 0.53% 0.00% NA
Tropical Japonica  36 97.20% 0.00% 2.78% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 94.40% 3.10% 2.60% 0.00% NA