TTCTACTGCTGCGAGGCACAAGGTGCGTATAGTTGAAAAGAGTAAAAAGGTACACAACTGCAAAAATCAGCTCGGTCTACAACCGCTTAAAATTACGTTC[CGTCCTTATA/CGTCCTTATT,CATCCTTATA]
TATAGATTCATTTGTTTCTACCTTATTTCTCCCTCTGTTTTTTCTCTATTTGACATTGAACTAACCAACATCAGAAGTTTGGAAACATAGACATTATTAA
TTAATAATGTCTATGTTTCCAAACTTCTGATGTTGGTTAGTTCAATGTCAAATAGAGAAAAAACAGAGGGAGAAATAAGGTAGAAACAAATGAATCTATA[TATAAGGACG/AATAAGGACG,TATAAGGATG]
GAACGTAATTTTAAGCGGTTGTAGACCGAGCTGATTTTTGCAGTTGTGTACCTTTTTACTCTTTTCAACTATACGCACCTTGTGCCTCGCAGCAGTAGAA
| Populations | Population Size | Frequency of CGTCCTTATT(primary allele) | Frequency of CGTCCTTATA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 50.00% | 45.50% | 8.27% | 0.00% | NA |
| All Indica | 492 | 76.60% | 16.60% | 8.13% | 0.00% | NA |
| All Japonica | 244 | 0.90% | 90.20% | 9.02% | 0.00% | NA |
| Aus | 7 | 14.30% | 85.70% | 0.00% | 0.00% | NA |
| Indica I | 492 | 76.60% | 16.60% | 8.13% | 0.00% | NA |
| Indica II | 215 | 72.60% | 22.80% | 6.05% | 0.00% | NA |
| Indica III | 21 | 76.20% | 20.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 72.10% | 17.50% | 12.63% | 0.00% | NA |
| Temperate Japonica | 189 | 0.60% | 91.00% | 8.47% | 0.00% | NA |
| Tropical Japonica | 36 | 3.20% | 83.30% | 13.89% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 94.70% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 22.20% | 77.80% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 61.50% | 30.40% | 11.69% | 0.00% | NA |