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Detailed information for vg1224489196:

Variant ID: vg1224489196 (JBrowse)	Variation Type: SNP
Chromosome: chr12	Position: 24489196
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 304. )

Flanking Sequence (100 bp) in Reference Genome:

AATCAACTAGCAGATATTTCATGATTTATAATTTTTTATTCAAGTCATGCATTTAGTCAATTTATCCAGCACCATACACCCATACAAAACCTAAATATTG[G/A]
TAATCTGAAATATCCTTATTTATGTCATCCAGTAACTAATGCTTGCTTATTCAGGTGGCGAAAGAGAGTGCCGATGTCATAATTCTGGACGACAACTTCT

Reverse complement sequence

AGAAGTTGTCGTCCAGAATTATGACATCGGCACTCTCTTTCGCCACCTGAATAAGCAAGCATTAGTTACTGGATGACATAAATAAGGATATTTCAGATTA[C/T]
CAATATTTAGGTTTTGTATGGGTGTATGGTGCTGGATAAATTGACTAAATGCATGACTTGAATAAAAAATTATAAATCATGAAATATCTGCTAGTTGATT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: