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Detailed information for vg1224016863:

Variant ID: vg1224016863 (JBrowse)	Variation Type: SNP
Chromosome: chr12	Position: 24016863
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.91, C: 0.09, others allele: 0.00, population size: 97. )

Flanking Sequence (100 bp) in Reference Genome:

AGAATGTTTACTGTAGCATCACATAGGCTAATCATGAATTAATTAGGCTCAATAGATTCGTCTCACGAATTAGTCCAAGATTATGGATGGGTTTTATTAA[T/C]
AGTCTATGTTCAATATTTATAATTAGTGTCTAAACATCCACGATGTGATAGGGACTTAAAAGTTTTAGTCACATCTAAACAGGTCTAAGATCGTGCCTTG

Reverse complement sequence

CAAGGCACGATCTTAGACCTGTTTAGATGTGACTAAAACTTTTAAGTCCCTATCACATCGTGGATGTTTAGACACTAATTATAAATATTGAACATAGACT[A/G]
TTAATAAAACCCATCCATAATCTTGGACTAATTCGTGAGACGAATCTATTGAGCCTAATTAATTCATGATTAGCCTATGTGATGCTACAGTAAACATTCT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: