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Detailed information for vg0915690278:

Variant ID: vg0915690278 (JBrowse)	Variation Type: SNP
Chromosome: chr09	Position: 15690278
Reference Allele: T	Alternative Allele: G,C
Primary Allele: T	Secondary Allele: G

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.01, others allele: 0.00, population size: 318. )

Flanking Sequence (100 bp) in Reference Genome:

TCCGACCTTGTCAGGTATAAAGCTAGTTATCCTCTTGTTGCTCGCATCTAGTTACCCTCTTGTGTTCGGTTTACGCTGGCACTCTCTGTCTTGAACCTAC[T/G,C]
GCCATGAAGATCGGGCCACCCCTCGCGAGTGTGTTCGCATCATATGGTATCGGAGCTTTCGTTGACACGGTAGGTTTATCATCCACATATCAACCTTGTT

Reverse complement sequence

AACAAGGTTGATATGTGGATGATAAACCTACCGTGTCAACGAAAGCTCCGATACCATATGATGCGAACACACTCGCGAGGGGTGGCCCGATCTTCATGGC[A/C,G]
GTAGGTTCAAGACAGAGAGTGCCAGCGTAAACCGAACACAAGAGGGTAACTAGATGCGAGCAACAAGAGGATAACTAGCTTTATACCTGACAAGGTCGGA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: