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Detailed information for vg0612239920:

Variant ID: vg0612239920 (JBrowse)	Variation Type: SNP
Chromosome: chr06	Position: 12239920
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.96, T: 0.02, others allele: 0.00, population size: 45. )

Flanking Sequence (100 bp) in Reference Genome:

CCGTCCATGGCGACCTCAAAGTCGCGCTTGCTTGCATGGAGCAGCGCGCGGACCATCTCGCCGCGGCATCCAAGCCCGCGGGTGGCGACGAGAGGCTCAG[C/T]
ACCTCTGTCCCAGCCGCCCCGAGGCAGCGGATGATCACGTGCGATGAGGTCCCGATCAAGCAGGTTGCCCTGGGCGACGGCCCGTCCAAGACCACACGAA

Reverse complement sequence

TTCGTGTGGTCTTGGACGGGCCGTCGCCCAGGGCAACCTGCTTGATCGGGACCTCATCGCACGTGATCATCCGCTGCCTCGGGGCGGCTGGGACAGAGGT[G/A]
CTGAGCCTCTCGTCGCCACCCGCGGGCTTGGATGCCGCGGCGAGATGGTCCGCGCGCTGCTCCATGCAAGCAAGCGCGACTTTGAGGTCGCCATGGACGG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: