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Detailed information for vg0519883496:

Variant ID: vg0519883496 (JBrowse)	Variation Type: SNP
Chromosome: chr05	Position: 19883496
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.01, others allele: 0.00, population size: 295. )

Flanking Sequence (100 bp) in Reference Genome:

AATCTTCAGCCATAATATAAGATTGCATCCTACTACACCAATGAGAAAAATTCGTTCCATCGAAAACATGAGGCTTAGTTGAGAACCTAGCGGGAGTAGC[C/T]
ATGGCAAAAACTCTAGATCAATAAAAATCCAAAGAGGAAAACAAGGCTCTGATACCACTTGTAGGATTGAATCATAAGAACTAAGCCAACTAGAGGGGGG

Reverse complement sequence

CCCCCCTCTAGTTGGCTTAGTTCTTATGATTCAATCCTACAAGTGGTATCAGAGCCTTGTTTTCCTCTTTGGATTTTTATTGATCTAGAGTTTTTGCCAT[G/A]
GCTACTCCCGCTAGGTTCTCAACTAAGCCTCATGTTTTCGATGGAACGAATTTTTCTCATTGGTGTAGTAGGATGCAATCTTATATTATGGCTGAAGATT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: