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Detailed information for vg0434789415:

Variant ID: vg0434789415 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 34789415
Reference Allele: A	Alternative Allele: T
Primary Allele: A	Secondary Allele: T

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 304. )

Flanking Sequence (100 bp) in Reference Genome:

CTTCTTGCATCCAGAAGATAGCAGCCAGGAGAAAGTGAAATTATGGCTGTTGAAGGATAAATTAAGGCAAGCAGTGTCCAAACACTTGCATATACTTATA[A/T]
TGTTGCTAATTACGGTCCACTAATATGATAAATTGATGTATTTGATTTATCTTTTTCATCTGCATGGATGCATGGAATACAGTGGAATGGATCACGATAG

Reverse complement sequence

CTATCGTGATCCATTCCACTGTATTCCATGCATCCATGCAGATGAAAAAGATAAATCAAATACATCAATTTATCATATTAGTGGACCGTAATTAGCAACA[T/A]
TATAAGTATATGCAAGTGTTTGGACACTGCTTGCCTTAATTTATCCTTCAACAGCCATAATTTCACTTTCTCCTGGCTGCTATCTTCTGGATGCAAGAAG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: