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Detailed information for vg0313235407:

Variant ID: vg0313235407 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 13235407
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.98, A: 0.01, others allele: 0.00, population size: 254. )

Flanking Sequence (100 bp) in Reference Genome:

AAATTAGAAGAGGAGCAATTGGGAGTAACATTTTGCATCCCAAAATTTAAACACATAAACTTAGCATACATCAAAGGGGAGAGCAATTGGGTACCTCCTA[G/A]
TCTCCTAGAATTGAACAGAGAGATCGGATTTTTGCATCCGGCTGCCAGTTGCAGTTTTGCCGCCGAGCACGACGCCGTAGACATGTAGCCGCGCGCAGTC

Reverse complement sequence

GACTGCGCGCGGCTACATGTCTACGGCGTCGTGCTCGGCGGCAAAACTGCAACTGGCAGCCGGATGCAAAAATCCGATCTCTCTGTTCAATTCTAGGAGA[C/T]
TAGGAGGTACCCAATTGCTCTCCCCTTTGATGTATGCTAAGTTTATGTGTTTAAATTTTGGGATGCAAAATGTTACTCCCAATTGCTCCTCTTCTAATTT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: