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Detailed information for vg0114317961:

Variant ID: vg0114317961 (JBrowse)	Variation Type: SNP
Chromosome: chr01	Position: 14317961
Reference Allele: T	Alternative Allele: A
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.01, others allele: 0.00, population size: 109. )

Flanking Sequence (100 bp) in Reference Genome:

CGCGACAACAATCCTACATGCATGTAGTTACACACCTGAACAGGTGGTAGTAATTAACAAATAAATAAGCATAATTTGTACCAATGACAACATACACAAC[T/A]
GTAAAAGGAGAGTTTTTGTTGGTGACAACATAGCACCCATATATTAATACATATGGCCATATATAAAGTTGCACAAGCAATGAGATGAAACAAGCATAGT

Reverse complement sequence

ACTATGCTTGTTTCATCTCATTGCTTGTGCAACTTTATATATGGCCATATGTATTAATATATGGGTGCTATGTTGTCACCAACAAAAACTCTCCTTTTAC[A/T]
GTTGTGTATGTTGTCATTGGTACAAATTATGCTTATTTATTTGTTAATTACTACCACCTGTTCAGGTGTGTAACTACATGCATGTAGGATTGTTGTCGCG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: