34 variations found. LOC_Os04g32870 (pentatricopeptide repeat-containing protein; putative; expressed), ranging from 19,849,117 bp to 19,850,578 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| vg0419849194 (J) | chr04 | 19849194 | A | G | 23.90% | 21.73% | A -> G | NA |
LOC_Os04g32870.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os04g32870.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 91.297; most accessible tissue: Zhenshan97 flag leaf, score: 94.536 |
| vg0419849301 (J) | chr04 | 19849301 | A | C | 99.90% | 0.00% | A -> C | NA |
LOC_Os04g32870.1 Alt: C| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 92.106; most accessible tissue: Zhenshan97 young leaf, score: 94.791 |
| vg0419849330 (J) | chr04 | 19849330 | G | T | 98.60% | 0.23% | G -> T | NA |
LOC_Os04g32870.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os04g32870.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 88.813; most accessible tissue: Zhenshan97 young leaf, score: 95.409 |
| vg0419849344 (J) | chr04 | 19849344 | C | T | 97.60% | 0.17% | C -> T | NA |
LOC_Os04g32870.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os04g32870.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 89.030; most accessible tissue: Zhenshan97 young leaf, score: 95.494 |
| vg0419849346 (J) | chr04 | 19849346 | A | C | 98.60% | 0.23% | A -> C | NA |
LOC_Os04g32870.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os04g32870.1 Alt: DEL/frameshift_variant(CooVar) The average chromatin accessibility score: 89.096; most accessible tissue: Zhenshan97 young leaf, score: 95.636 |
| vg0419849444 (J) | chr04 | 19849444 | A | G | 97.70% | 0.00% | A -> G | NA |
LOC_Os04g32870.1 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 93.382; most accessible tissue: Minghui63 panicle, score: 98.004 |
| vg0419849477 (J) | chr04 | 19849477 | G | C | 99.90% | 0.00% | G -> C | NA |
LOC_Os04g32870.1 Alt: C| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.428; most accessible tissue: Minghui63 panicle, score: 98.004 |
| vg0419849493 (J) | chr04 | 19849493 | A | G | 99.90% | 0.00% | A -> G | NA |
LOC_Os04g32870.1 Alt: G| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.391; most accessible tissue: Minghui63 panicle, score: 98.021 |
| vg0419849531 (J) | chr04 | 19849531 | G | T | 99.80% | 0.00% | G -> A,T | NA |
LOC_Os04g32870.1 Alt: A| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32870.1 Alt: T| synonymous_variant LOW(snpEff) LOC_Os04g32880.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.106; most accessible tissue: Minghui63 panicle, score: 97.952 |
| vg0419849535 (J) | chr04 | 19849535 | A | G | 99.90% | 0.00% | A -> G | NA |
LOC_Os04g32870.1 Alt: G| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.083; most accessible tissue: Minghui63 panicle, score: 97.952 |
| vg0419849553 (J) | chr04 | 19849553 | AGC | A | 99.70% | 0.00% | AGC -> A | NA |
LOC_Os04g32870.1 Alt: A| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar)
The average chromatin accessibility score: 93.002; most accessible tissue: Minghui63 panicle, score: 97.915 |
| vg0419849561 (J) | chr04 | 19849561 | C | T | 99.70% | 0.00% | C -> T | NA |
LOC_Os04g32870.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 93.092; most accessible tissue: Minghui63 panicle, score: 97.896 |
| vg0419849596 (J) | chr04 | 19849596 | G | C | 99.90% | 0.00% | G -> C | NA |
LOC_Os04g32870.1 Alt: C| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.438; most accessible tissue: Minghui63 panicle, score: 98.254 |
| vg0419849652 (J) | chr04 | 19849652 | C | T | 98.00% | 0.00% | C -> T | NA |
LOC_Os04g32870.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/probably damaging(PolyPhen-2)
The average chromatin accessibility score: 91.357; most accessible tissue: Minghui63 panicle, score: 98.038 |
| vg0419849662 (J) | chr04 | 19849662 | T | C | 99.90% | 0.00% | T -> C | NA |
LOC_Os04g32870.1 Alt: C| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.366; most accessible tissue: Minghui63 panicle, score: 98.071 |
| vg0419849735 (J) | chr04 | 19849735 | C | A | 99.90% | 0.00% | C -> A | NA |
LOC_Os04g32870.1 Alt: A| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: A| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 94.320; most accessible tissue: Minghui63 panicle, score: 98.182 |
| vg0419849741 (J) | chr04 | 19849741 | C | T | 98.00% | 0.00% | C -> T | NA |
LOC_Os04g32870.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 94.252; most accessible tissue: Minghui63 panicle, score: 98.151 |
| vg0419849752 (J) | chr04 | 19849752 | A | G | 99.90% | 0.00% | A -> G | NA |
LOC_Os04g32870.1 Alt: G| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 94.144; most accessible tissue: Minghui63 panicle, score: 98.167 |
| vg0419849754 (J) | chr04 | 19849754 | A | G | 99.90% | 0.00% | A -> G | NA |
LOC_Os04g32870.1 Alt: G| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 94.113; most accessible tissue: Minghui63 panicle, score: 98.151 |
| vg0419849790 (J) | chr04 | 19849790 | G | A | 98.00% | 0.00% | G -> A | NA |
LOC_Os04g32870.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/probably damaging(PolyPhen-2)
The average chromatin accessibility score: 93.292; most accessible tissue: Minghui63 panicle, score: 96.805 |
| vg0419849794 (J) | chr04 | 19849794 | A | T | 99.90% | 0.00% | A -> T | NA |
LOC_Os04g32870.1 Alt: T| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.296; most accessible tissue: Minghui63 panicle, score: 96.769 |
| vg0419849822 (J) | chr04 | 19849822 | C | G | 99.90% | 0.00% | C -> G | NA |
LOC_Os04g32870.1 Alt: G| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.041; most accessible tissue: Minghui63 panicle, score: 96.546 |
| vg0419849891 (J) | chr04 | 19849891 | G | T | 99.90% | 0.00% | G -> T | NA |
LOC_Os04g32870.1 Alt: T| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.071; most accessible tissue: Minghui63 panicle, score: 96.467 |
| vg0419849954 (J) | chr04 | 19849954 | G | C | 97.70% | 0.00% | G -> C | NA |
LOC_Os04g32870.1 Alt: C| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 93.307; most accessible tissue: Minghui63 flag leaf, score: 96.294 |
| vg0419850040 (J) | chr04 | 19850040 | T | A | 98.60% | 0.00% | T -> A | NA |
LOC_Os04g32870.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
The average chromatin accessibility score: 92.426; most accessible tissue: Zhenshan97 flower, score: 95.531 |
| vg0419850153 (J) | chr04 | 19850153 | C | A | 98.00% | 0.00% | C -> A | NA |
LOC_Os04g32870.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
The average chromatin accessibility score: 89.260; most accessible tissue: Zhenshan97 flower, score: 95.009 |
| vg0419850161 (J) | chr04 | 19850161 | C | T | 71.80% | 0.08% | C -> T |
mr1002 (Jap_All); LR P-value: 3.72E-06;
mr1026 (Jap_All); LR P-value: 9.06E-06; mr1137 (Jap_All); LR P-value: 1.83E-09; mr1177 (Jap_All); LR P-value: 8.14E-06; mr1180 (Jap_All); LR P-value: 3.78E-06; mr1182 (Jap_All); LR P-value: 2.46E-06; mr1183 (Jap_All); LR P-value: 7.02E-08; mr1229 (Jap_All); LR P-value: 1.88E-07; mr1261 (Jap_All); LMM P-value: 5.18E-06; LR P-value: 5.17E-06; mr1441 (Jap_All); LR P-value: 3.74E-06; mr1503 (Jap_All); LR P-value: 2.43E-07; mr1521 (All); LR P-value: 8.67E-15; mr1521 (Jap_All); LR P-value: 5.67E-07; mr1596 (Jap_All); LR P-value: 1.00E-05; mr1617 (Jap_All); LR P-value: 2.04E-08; mr1627 (Jap_All); LR P-value: 2.46E-06; mr1763 (Jap_All); LR P-value: 3.71E-06; mr1794 (Jap_All); LR P-value: 5.16E-06; mr1851 (All); LR P-value: 6.38E-07; mr1852 (All); LR P-value: 1.07E-06; mr1864 (All); LR P-value: 1.50E-11; mr1880 (Jap_All); LR P-value: 6.15E-11; mr1077_2 (Jap_All); LR P-value: 3.87E-06; mr1137_2 (Jap_All); LR P-value: 5.04E-10; mr1180_2 (Jap_All); LR P-value: 3.62E-07; mr1182_2 (Jap_All); LR P-value: 4.47E-06; mr1229_2 (Jap_All); LR P-value: 1.77E-07; mr1596_2 (Jap_All); LR P-value: 4.80E-06; mr1617_2 (Jap_All); LR P-value: 4.02E-06; mr1880_2 (Jap_All); LR P-value: 5.47E-08; mr1905_2 (All); LR P-value: 2.13E-08; mr1977_2 (Ind_All); LR P-value: 3.68E-06 |
LOC_Os04g32870.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os04g32870.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 89.305; most accessible tissue: Zhenshan97 flower, score: 95.078 |
| vg0419850308 (J) | chr04 | 19850308 | G | A | 99.90% | 0.00% | G -> A | NA |
LOC_Os04g32870.1 Alt: A| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: A| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.183; most accessible tissue: Zhenshan97 flower, score: 95.183 |
| vg0419850314 (J) | chr04 | 19850314 | G | C | 99.90% | 0.00% | G -> C | NA |
LOC_Os04g32870.1 Alt: C| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 90.966; most accessible tissue: Zhenshan97 flower, score: 95.144 |
| vg0419850327 (J) | chr04 | 19850327 | G | A | 99.40% | 0.00% | G -> A | NA |
LOC_Os04g32870.1 Alt: A| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: A| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 89.708; most accessible tissue: Zhenshan97 flower, score: 95.209 |
| vg0419850349 (J) | chr04 | 19850349 | T | C | 99.90% | 0.00% | T -> C | NA |
LOC_Os04g32870.1 Alt: C| missense_variant MODERATE(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 89.610; most accessible tissue: Zhenshan97 flower, score: 95.117 |
| vg0419850419 (J) | chr04 | 19850419 | T | A | 99.90% | 0.00% | T -> A | NA |
LOC_Os04g32870.1 Alt: A| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: A| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 89.956; most accessible tissue: Zhenshan97 flower, score: 95.668 |
| vg0419850458 (J) | chr04 | 19850458 | T | C | 99.80% | 0.00% | T -> C | NA |
LOC_Os04g32870.1 Alt: C| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.631; most accessible tissue: Zhenshan97 flower, score: 95.646 |
| vg0419850473 (J) | chr04 | 19850473 | T | C | 99.90% | 0.00% | T -> C | NA |
LOC_Os04g32870.1 Alt: C| synonymous_variant LOW(snpEff)
LOC_Os04g32880.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.2 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.4 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.5 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os04g32880.3 Alt: C| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.577; most accessible tissue: Zhenshan97 flower, score: 95.690 |