Haplotype Network Analysis:

Please input SNP IDs (the number of SNPs < 100) for this analysis (e.g., vg0122375601, vg0122375642, vg0122375884, vg0122375947, vg0122375984, vg0122376428, vg0122376434, vg0122376509, vg0122376511, vg0122376514). You can choose different group set to do this analysis.

Classification 1: Indica, Japonica and Intermediate (Indica group includes Indica I, Indical II, Indica III, Indica Intermediate and Aus. Japonica group includes Temperate Japonica, Tropical Japonica and Japonic Intermediate. Intermediate group includes Aromatic and other accessions).
Classification 2: Indica, Japonica, Aus and Intermediate (Indica group includes Indica I, Indica II, Indica III and Indica Intermediate. Japonica group includes Temperate Japonica, Tropical Japonica and Japonic Intermediate. Intermediate group includes Aromatic and other accessions).
Classification 3: Indica I, Indica II, Indica III, Indica Intermediate, Aus, Temperate Japonica, Tropical Japonica, Japonica Intermediate and Intermediate (Intermediate group includes Aromatic and other accessions)

The detailed information of the classification can be found in the "Notes and Data Evaluation" page.