10 variations found. Os11g0275800/LOC_Os11g17580 (enoyl-CoA hydratase%2Fisomerase family protein; expressed), ranging from 9,788,006 bp to 9,788,714 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os11g17580 | enoyl-CoA hydratase/isomerase family protein; RAP ID: Os11g0275800; MSU ID: LOC_Os11g17580 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| vg1109788022 (J) | chr11 | 9788022 | T | A | 96.40% | 0.00% | T -> A |
LOC_Os11g17580.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 68.856; most accessible tissue: Callus, score: 85.410 |
|
| vg1109788044 (J) | chr11 | 9788044 | G | C | 89.30% | 0.00% | G -> C |
LOC_Os11g17580.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 70.889; most accessible tissue: Callus, score: 85.410 |
|
| vg1109788068 (J) | chr11 | 9788068 | C | T | 99.20% | 0.00% | C -> T | NA |
LOC_Os11g17580.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 70.424; most accessible tissue: Callus, score: 85.410 |
| vg1109788196 (J) | chr11 | 9788196 | G | C | 67.20% | 0.00% | C -> G |
LOC_Os11g17580.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 72.807; most accessible tissue: Zhenshan97 young leaf, score: 87.584 |
|
| vg1109788305 (J) | chr11 | 9788305 | C | T | 98.80% | 0.00% | C -> T | NA |
LOC_Os11g17580.1 Alt: T| missense_variant MODERATE(snpEff)
LOC_Os11g17570.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 74.972; most accessible tissue: Zhenshan97 young leaf, score: 86.542 |
| vg1109788337 (J) | chr11 | 9788337 | T | G | 94.00% | 0.00% | T -> G |
LOC_Os11g17580.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 75.041; most accessible tissue: Zhenshan97 young leaf, score: 88.127 |
|
| vg1109788343 (J) | chr11 | 9788343 | C | T | 62.50% | 0.00% | T -> C | NA |
LOC_Os11g17580.1 Alt: C| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 74.873; most accessible tissue: Zhenshan97 young leaf, score: 87.859 |
| vg1109788437 (J) | chr11 | 9788437 | C | A | 95.90% | 0.00% | C -> A | NA |
LOC_Os11g17580.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 78.645; most accessible tissue: Zhenshan97 young leaf, score: 87.443 |
| vg1109788492 (J) | chr11 | 9788492 | G | C | 96.50% | 0.00% | G -> C | NA |
LOC_Os11g17580.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 79.223; most accessible tissue: Zhenshan97 young leaf, score: 88.259 |
| vg1109788700 (J) | chr11 | 9788700 | A | G | 94.10% | 0.00% | A -> G |
LOC_Os11g17580.1 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 80.308; most accessible tissue: Callus, score: 89.320 |